rs27589999 SNP Detail

Summary

• ID
  rs27589999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCATG TGGGTGACAG
  CCAGGACTGG CTGAGCAGAT CTGCAGCAAG AGCTTAGGAT GCTGGGGCCA GACCCCCTGG
  GCTTGGCTTA GCTACTCATC AGGCCTCCTG GCTGGGGCTC GAGCTTCAGA GAGCAGAGCC
  AACGCTGCTC TCAGGGCAGT TGTGGCTCCC TGGGCTGTCC TGGCTTTCTC CTGGGATGTG
  Y
  CTCCCAGCCT TGGTGTCTGT AAATAGAAGC CCACACTGTA CAGATCTACA GAGAGGCCCA
  AACTGGGCTC TGGTGTCACC ATCTGAGGGG CTGATGGCCT GGCTTCCCCC AGGTGCCCTG
  TGGGTGCTTG GGTATGCCTG GCCCCGGCGT GGTGAATGCA TGTAAATACT TCGTAGACAG
  TGTGGCTCCA GAGAGCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753323	NES09165121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27589999					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753323	NES09165121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553056 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39291	transcription start site region 39291	1947 bp downstream
Tssr39292	transcription start site region 39292	1864 bp downstream
Tssr39293	transcription start site region 39293	121 bp upstream
Tssr39294	transcription start site region 39294	276 bp upstream
Tssr39295	transcription start site region 39295	442 bp upstream
Tssr39296	transcription start site region 39296	468 bp upstream