rs27590000 SNP Detail

Summary

• ID
  rs27590000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGCCAGG ACGATTTAAG
  AGAACTCAGT TCCAAGGGTG AACTGAATTC TTCCTAGTGC AATGTGGGTG CGGGGTTCCC
  ACCCTGCCCC AGAAACAGTG CGGTACATAC AGAGCCTGTC CAAAGGAGTC CAGAGACACC
  TCAGTGCTCC TGGGAAGGTA TTCAGGACAC CGGCTTGCCT GGAGACACAA TGCATTCTGA
  R
  TCAGAGGTGG TGATGTGTCC TGGACTTCTC TGGGCCCTGG TTTCCCTAGA GAGTAAGACA
  TGCTGGGGCC AGAGCACTGA AGAGCTAAGC TTCATCTCTC TTGGGGGCCA GACTAGGGAC
  TCTATGTGTA AGGTTGATTC TCCTTGATTG CCAGAGGCAT GTGGGTGACA GCCAGGACTG
  GCTGAGCAGA TCTGCAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753325	NES09165119	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A		A
ss321318876	CHEV_4_130381308	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590000					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753325	NES09165119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552704 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39285	transcription start site region 39285	1994 bp downstream
Tssr39286	transcription start site region 39286	1927 bp downstream
Tssr39287	transcription start site region 39287	1913 bp downstream
Tssr39288	transcription start site region 39288	1869 bp downstream
Tssr39289	transcription start site region 39289	1748 bp downstream
Tssr39290	transcription start site region 39290	1741 bp downstream
Tssr39291	transcription start site region 39291	1595 bp downstream
Tssr39292	transcription start site region 39292	1512 bp downstream
Tssr39293	transcription start site region 39293	473 bp upstream
Tssr39294	transcription start site region 39294	628 bp upstream
Tssr39295	transcription start site region 39295	794 bp upstream
Tssr39296	transcription start site region 39296	820 bp upstream