rs27590004 SNP Detail

Summary

• ID
  rs27590004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCCCTGG TAAGCTGCAG TCTTGGGGAC TAGAGCTTTG
  GAAAGAGAGG CTCAGCAGCT GGGCGAGGCA ACCTCCAGGT ACTCAGCCCA AGGGGACACC
  R
  CGACCAGGGC AGGAGGCCCC AGCTTCTGTG TTGGGCTAGG GTTCACTTCT CACATCTCAG
  GGTGGCTCTG GCCCTGGGGC TATGGGTTTG GCATCCTGAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753329	NES09165115	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590004					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753329	NES09165115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552249 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39282	transcription start site region 39282	1891 bp downstream
Tssr39283	transcription start site region 39283	1811 bp downstream
Tssr39284	transcription start site region 39284	1603 bp downstream
Tssr39285	transcription start site region 39285	1539 bp downstream
Tssr39286	transcription start site region 39286	1472 bp downstream
Tssr39287	transcription start site region 39287	1458 bp downstream
Tssr39288	transcription start site region 39288	1414 bp downstream
Tssr39289	transcription start site region 39289	1293 bp downstream
Tssr39290	transcription start site region 39290	1286 bp downstream
Tssr39291	transcription start site region 39291	1140 bp downstream
Tssr39292	transcription start site region 39292	1057 bp downstream
Tssr39293	transcription start site region 39293	928 bp upstream
Tssr39294	transcription start site region 39294	1083 bp upstream
Tssr39295	transcription start site region 39295	1249 bp upstream
Tssr39296	transcription start site region 39296	1275 bp upstream