rs27590020 SNP Detail

Summary

• ID
  rs27590020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130548075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCAAAG CAGCGGGCCT
  TCAACCTCGC AGGGACCTTA GAGCCTAGGA GTGGACTTTG GAGTCCTGCA GACCCTCTCT
  GGCCCCAGCC AGTCCCATAA GGCTTGTGCC CAGGCCCTTC CCTCAGAGAG GGAGCCTTGC
  GGGAAGGAGG AACAATGGCA GGGTGTGGCC CAGAAGCAGA AACAGAAGCA GGTGTCGAAG
  R
  TTTGGGGCCT GGCCTTGCCA TACTCAGGCC CACCCTTGCC TCTCTGTCAT GAAGCAGCTG
  TGTACACCAC CTCTCAGCAG CTCCCATGGC CTCACTTAAG TCCCTCAGCT CAGCTGCTCT
  CCCCTCTGCA GTGGGGAGCC ATAAGTGTAT GGTCACTGGG TTGGTTTGGG GATATCAGCT
  CACAGACCGG TCTCCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753345	NES09165177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590020					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753345	NES09165177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130548075 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39271	transcription start site region 39271	1976 bp downstream
Tssr39272	transcription start site region 39272	1960 bp downstream
Tssr39273	transcription start site region 39273	1905 bp downstream
Tssr39274	transcription start site region 39274	1863 bp downstream
Tssr39275	transcription start site region 39275	1847 bp downstream
Tssr39276	transcription start site region 39276	1811 bp downstream
Tssr39277	transcription start site region 39277	1794 bp downstream
Tssr39278	transcription start site region 39278	1783 bp downstream
Tssr39279	transcription start site region 39279	1416 bp upstream
Tssr39280	transcription start site region 39280	1892 bp upstream
Tssr39281	transcription start site region 39281	1958 bp upstream
Tssr43601	transcription start site region 43601	1845 bp upstream