rs27590021 SNP Detail

Summary

• ID
  rs27590021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCAGGA GGATTAGAAG
  TTTAAAGTTG TCCTCCCTTA TGTAGTCAGT TCTAGGTCAG CCTGGGCTAC ATGAGACCCT
  GGCTGGAAAA ACTATTTTTC GAGCACCAAA CTGAAAGGGG ACACAATGAC TATCAAGACC
  CTCAAAGCAG CGGGCCTTCA ACCTCGCAGG GACCTTAGAG CCTAGGAGTG GACTTTGGAG
  Y
  CCTGCAGACC CTCTCTGGCC CCAGCCAGTC CCATAAGGCT TGTGCCCAGG CCCTTCCCTC
  AGAGAGGGAG CCTTGCGGGA AGGAGGAACA ATGGCAGGGT GTGGCCCAGA AGCAGAAACA
  GAAGCAGGTG TCGAAGGTTT GGGGCCTGGC CTTGCCATAC TCAGGCCCAC CCTTGCCTCT
  CTGTCATGAA GCAGCTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37753346	NES09165176	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27590021					SNP	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753346	NES09165176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547938 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39266	transcription start site region 39266	1999 bp downstream
Tssr39267	transcription start site region 39267	1980 bp downstream
Tssr39268	transcription start site region 39268	1950 bp downstream
Tssr39269	transcription start site region 39269	1913 bp downstream
Tssr39270	transcription start site region 39270	1884 bp downstream
Tssr39271	transcription start site region 39271	1839 bp downstream
Tssr39272	transcription start site region 39272	1823 bp downstream
Tssr39273	transcription start site region 39273	1768 bp downstream
Tssr39274	transcription start site region 39274	1726 bp downstream
Tssr39275	transcription start site region 39275	1710 bp downstream
Tssr39276	transcription start site region 39276	1674 bp downstream
Tssr39277	transcription start site region 39277	1657 bp downstream
Tssr39278	transcription start site region 39278	1646 bp downstream
Tssr39279	transcription start site region 39279	1553 bp upstream
Tssr43599	transcription start site region 43599	1918 bp upstream
Tssr43600	transcription start site region 43600	1875 bp upstream
Tssr43601	transcription start site region 43601	1708 bp upstream