rs27590022 SNP Detail

Summary

• ID
  rs27590022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTCCAG CACCTTCCAG
  GTAGAGGCAG GAGGATTAGA AGTTTAAAGT TGTCCTCCCT TATGTAGTCA GTTCTAGGTC
  AGCCTGGGCT ACATGAGACC CTGGCTGGAA AAACTATTTT TCGAGCACCA AACTGAAAGG
  GGACACAATG ACTATCAAGA CCCTCAAAGC AGCGGGCCTT CAACCTCGCA GGGACCTTAG
  R
  GCCTAGGAGT GGACTTTGGA GTCCTGCAGA CCCTCTCTGG CCCCAGCCAG TCCCATAAGG
  CTTGTGCCCA GGCCCTTCCC TCAGAGAGGG AGCCTTGCGG GAAGGAGGAA CAATGGCAGG
  GTGTGGCCCA GAAGCAGAAA CAGAAGCAGG TGTCGAAGGT TTGGGGCCTG GCCTTGCCAT
  ACTCAGGCCC ACCCTTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753347	NES09165175	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		A
ss321318856	CHEV_4_130376520	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590022					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753347	NES09165175	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547916 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1999 bp downstream
Tssr39266	transcription start site region 39266	1977 bp downstream
Tssr39267	transcription start site region 39267	1958 bp downstream
Tssr39268	transcription start site region 39268	1928 bp downstream
Tssr39269	transcription start site region 39269	1891 bp downstream
Tssr39270	transcription start site region 39270	1862 bp downstream
Tssr39271	transcription start site region 39271	1817 bp downstream
Tssr39272	transcription start site region 39272	1801 bp downstream
Tssr39273	transcription start site region 39273	1746 bp downstream
Tssr39274	transcription start site region 39274	1704 bp downstream
Tssr39275	transcription start site region 39275	1688 bp downstream
Tssr39276	transcription start site region 39276	1652 bp downstream
Tssr39277	transcription start site region 39277	1635 bp downstream
Tssr39278	transcription start site region 39278	1624 bp downstream
Tssr39279	transcription start site region 39279	1575 bp upstream
Tssr43599	transcription start site region 43599	1896 bp upstream
Tssr43600	transcription start site region 43600	1853 bp upstream
Tssr43601	transcription start site region 43601	1686 bp upstream