rs27590023 SNP Detail

Summary

• ID
  rs27590023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTCTG GAACAGTCCA
  CAAGCCAGCT GCTCCGTGGT TGTCATCGTC ATGGCCTGAG GGTGACTAAG TGGGTGCTGT
  GGGGAGACAC CTGGCTGCAG CCATTGTAGG GCATTCTCCC TGAATACTTC TCCAGCCCCG
  CCCCTCCCCA TTCTGCTGAC TGATCACCTC TTTTTTCATG TGAGGCAGAG GAAGCCATGT
  Y
  TCTAGGTTCC TTGGGTAGTA GTTGAATCAG GATTCAAACA CTGGCTGGCT GGGGCCCCTT
  GAGCTTAGGC TCCTAAGGGT GGGGGCCCCT GAAGCTTGGG GGTTTCTGAA GTTAGGGGGC
  CCTTGAGCTG GAGCCAGGGT TAAGCTAGGT AGGGCACGGG GATTGAAGGA GAGACCGTGA
  TGAGGGTGGA GGGACTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753348	NES09165220	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590023					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753348	NES09165220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547445 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1528 bp downstream
Tssr39266	transcription start site region 39266	1506 bp downstream
Tssr39267	transcription start site region 39267	1487 bp downstream
Tssr39268	transcription start site region 39268	1457 bp downstream
Tssr39269	transcription start site region 39269	1420 bp downstream
Tssr39270	transcription start site region 39270	1391 bp downstream
Tssr39271	transcription start site region 39271	1346 bp downstream
Tssr39272	transcription start site region 39272	1330 bp downstream
Tssr39273	transcription start site region 39273	1275 bp downstream
Tssr39274	transcription start site region 39274	1233 bp downstream
Tssr39275	transcription start site region 39275	1217 bp downstream
Tssr39276	transcription start site region 39276	1181 bp downstream
Tssr39277	transcription start site region 39277	1164 bp downstream
Tssr39278	transcription start site region 39278	1153 bp downstream
Tssr43599	transcription start site region 43599	1425 bp upstream
Tssr43600	transcription start site region 43600	1382 bp upstream
Tssr43601	transcription start site region 43601	1215 bp upstream