rs27590024 SNP Detail

Summary

• ID
  rs27590024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCTGA CCATTTAGTT
  CTTAGAATTC TGGAACAGTC CACAAGCCAG CTGCTCCGTG GTTGTCATCG TCATGGCCTG
  AGGGTGACTA AGTGGGTGCT GTGGGGAGAC ACCTGGCTGC AGCCATTGTA GGGCATTCTC
  CCTGAATACT TCTCCAGCCC CGCCCCTCCC CATTCTGCTG ACTGATCACC TCTTTTTTCA
  Y
  GTGAGGCAGA GGAAGCCATG TTTCTAGGTT CCTTGGGTAG TAGTTGAATC AGGATTCAAA
  CACTGGCTGG CTGGGGCCCC TTGAGCTTAG GCTCCTAAGG GTGGGGGCCC CTGAAGCTTG
  GGGGTTTCTG AAGTTAGGGG GCCCTTGAGC TGGAGCCAGG GTTAAGCTAG GTAGGGCACG
  GGGATTGAAG GAGAGACCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753349	NES09165219	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590024					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753349	NES09165219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547423 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1506 bp downstream
Tssr39266	transcription start site region 39266	1484 bp downstream
Tssr39267	transcription start site region 39267	1465 bp downstream
Tssr39268	transcription start site region 39268	1435 bp downstream
Tssr39269	transcription start site region 39269	1398 bp downstream
Tssr39270	transcription start site region 39270	1369 bp downstream
Tssr39271	transcription start site region 39271	1324 bp downstream
Tssr39272	transcription start site region 39272	1308 bp downstream
Tssr39273	transcription start site region 39273	1253 bp downstream
Tssr39274	transcription start site region 39274	1211 bp downstream
Tssr39275	transcription start site region 39275	1195 bp downstream
Tssr39276	transcription start site region 39276	1159 bp downstream
Tssr39277	transcription start site region 39277	1142 bp downstream
Tssr39278	transcription start site region 39278	1131 bp downstream
Tssr43599	transcription start site region 43599	1403 bp upstream
Tssr43600	transcription start site region 43600	1360 bp upstream
Tssr43601	transcription start site region 43601	1193 bp upstream