rs27590026 SNP Detail

Summary

• ID
  rs27590026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTAGGT GGTTGGTGCT
  TTCTGTGTCT TCATTTCTTT ACCTGTGAAG GGAAGACCAG AGAAGGTACA CACACTGGTA
  ATCTTATCAC TGGGGAAACT GAGGCAGGAG GATTGCTGCA AGTTCAGTTC AGCCTGGGCT
  ATGCAGTAAG ACTGTTTCAA AGAGAGAGGC AGAGACAGAG AGACAGGGAG AGAGGCCTGG
  Y
  GTGGTCTGTA CATGGTCTTT CCTGACCATT TAGTTCTTAG AATTCTGGAA CAGTCCACAA
  GCCAGCTGCT CCGTGGTTGT CATCGTCATG GCCTGAGGGT GACTAAGTGG GTGCTGTGGG
  GAGACACCTG GCTGCAGCCA TTGTAGGGCA TTCTCCCTGA ATACTTCTCC AGCCCCGCCC
  CTCCCCATTC TGCTGACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753351	NES09165217	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T		T
ss321318850	CHEV_4_130375811	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590026					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753351	NES09165217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547207 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1290 bp downstream
Tssr39266	transcription start site region 39266	1268 bp downstream
Tssr39267	transcription start site region 39267	1249 bp downstream
Tssr39268	transcription start site region 39268	1219 bp downstream
Tssr39269	transcription start site region 39269	1182 bp downstream
Tssr39270	transcription start site region 39270	1153 bp downstream
Tssr39271	transcription start site region 39271	1108 bp downstream
Tssr39272	transcription start site region 39272	1092 bp downstream
Tssr39273	transcription start site region 39273	1037 bp downstream
Tssr39274	transcription start site region 39274	995 bp downstream
Tssr39275	transcription start site region 39275	979 bp downstream
Tssr39276	transcription start site region 39276	943 bp downstream
Tssr39277	transcription start site region 39277	926 bp downstream
Tssr39278	transcription start site region 39278	915 bp downstream
Tssr43599	transcription start site region 43599	1187 bp upstream
Tssr43600	transcription start site region 43600	1144 bp upstream
Tssr43601	transcription start site region 43601	977 bp upstream