rs27590028 SNP Detail

Summary

• ID
  rs27590028
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130546950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATTCAT GTCCTGAGCA
  ACATTAAAAG ATTGTCAGCC AACTAGGTGT GGTAGCACAC AATTTTAATC CCAGCACTTT
  AAAGGCAGAG GCGGGCAGAT CTCTATGAGT TTGAGGACAG CCTGATCTAC AGCATGAGTT
  CCAGGATGGC CAGAGCTAGA CCCTGTCTCA GGAAAACAAA GAAAAGAAAG AGTAAATAAG
  W
  GGCTGTCCGC CTGGATTTAA GCCACCTGCC ATCCTTTTTC TCTTTCGTCT TAAGACATTA
  GTAGGTGGTT GGTGCTTTCT GTGTCTTCAT TTCTTTACCT GTGAAGGGAA GACCAGAGAA
  GGTACACACA CTGGTAATCT TATCACTGGG GAAACTGAGG CAGGAGGATT GCTGCAAGTT
  CAGTTCAGCC TGGGCTATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37753353	NES09165223	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T		A		T	T		T
ss147462475	ENSMUSSNP224447	ENSEMBL	ENSEMBL_Sanger	f	SNP		T										A
ss321318847	CHEV_4_130375554	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27590028					SNP	T	T	T	T	T	T	A	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753353	NES09165223	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130546950 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1033 bp downstream
Tssr39266	transcription start site region 39266	1011 bp downstream
Tssr39267	transcription start site region 39267	992 bp downstream
Tssr39268	transcription start site region 39268	962 bp downstream
Tssr39269	transcription start site region 39269	925 bp downstream
Tssr39270	transcription start site region 39270	896 bp downstream
Tssr39271	transcription start site region 39271	851 bp downstream
Tssr39272	transcription start site region 39272	835 bp downstream
Tssr39273	transcription start site region 39273	780 bp downstream
Tssr39274	transcription start site region 39274	738 bp downstream
Tssr39275	transcription start site region 39275	722 bp downstream
Tssr39276	transcription start site region 39276	686 bp downstream
Tssr39277	transcription start site region 39277	669 bp downstream
Tssr39278	transcription start site region 39278	658 bp downstream
Tssr43599	transcription start site region 43599	930 bp upstream
Tssr43600	transcription start site region 43600	887 bp upstream
Tssr43601	transcription start site region 43601	720 bp upstream