rs27590029 SNP Detail

Summary

• ID
  rs27590029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130546457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACCGGC ATACAGGGGA
  TGCTGCCTCT TCCCCTGACC ACAGCTGCCA CAGCCAAGAT CACTACCCCA GCAGCACCCT
  CACCACCCAC TACTGTGGCT ACCTTGGACA CAGAGGCCCC GACACCTAGG CTGGTCAACA
  CAGCTACCTC GAGGCCACGA GCCCTTCCTC GGCCAGTCAC CACCCAGGAG CCTGATGTTG
  Y
  TGAGAGGAGT ACCCTGCCGT TGGGGACCAC GGCTCCTGGA CCCACGGAGA TGGCTCAGGT
  GAGGACAGTG GGTGAGGGGT TAGCGTGGGC AGAGATGGGT TGGGCAGGGA CCAGGAGGTA
  CCAGGGGTGA AGTAGGCAAG GTGGGCCTAG TGTGTGTGCT GAGTGGGAGC CTCTGGATGG
  GGTTGGGGGA GGTCAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753354	NES09165266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753354	NES09165266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130546457 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	540 bp downstream
Tssr39266	transcription start site region 39266	518 bp downstream
Tssr39267	transcription start site region 39267	499 bp downstream
Tssr39268	transcription start site region 39268	469 bp downstream
Tssr39269	transcription start site region 39269	432 bp downstream
Tssr39270	transcription start site region 39270	403 bp downstream
Tssr39271	transcription start site region 39271	358 bp downstream
Tssr39272	transcription start site region 39272	342 bp downstream
Tssr39273	transcription start site region 39273	287 bp downstream
Tssr39274	transcription start site region 39274	245 bp downstream
Tssr39275	transcription start site region 39275	229 bp downstream
Tssr39276	transcription start site region 39276	193 bp downstream
Tssr39277	transcription start site region 39277	176 bp downstream
Tssr39278	transcription start site region 39278	165 bp downstream
Tssr43599	transcription start site region 43599	437 bp upstream
Tssr43600	transcription start site region 43600	394 bp upstream
Tssr43601	transcription start site region 43601	227 bp upstream