rs27590030 SNP Detail

Summary

• ID
  rs27590030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130546426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCCAC GGCTACCGTG
  GCTGACGTAA GGACCACCGG CATACAGGGG ATGCTGCCTC TTCCCCTGAC CACAGCTGCC
  ACAGCCAAGA TCACTACCCC AGCAGCACCC TCACCACCCA CTACTGTGGC TACCTTGGAC
  ACAGAGGCCC CGACACCTAG GCTGGTCAAC ACAGCTACCT CGAGGCCACG AGCCCTTCCT
  Y
  GGCCAGTCAC CACCCAGGAG CCTGATGTTG CTGAGAGGAG TACCCTGCCG TTGGGGACCA
  CGGCTCCTGG ACCCACGGAG ATGGCTCAGG TGAGGACAGT GGGTGAGGGG TTAGCGTGGG
  CAGAGATGGG TTGGGCAGGG ACCAGGAGGT ACCAGGGGTG AAGTAGGCAA GGTGGGCCTA
  GTGTGTGTGC TGAGTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753355	NES09165265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590030					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753355	NES09165265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130546426 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	509 bp downstream
Tssr39266	transcription start site region 39266	487 bp downstream
Tssr39267	transcription start site region 39267	468 bp downstream
Tssr39268	transcription start site region 39268	438 bp downstream
Tssr39269	transcription start site region 39269	401 bp downstream
Tssr39270	transcription start site region 39270	372 bp downstream
Tssr39271	transcription start site region 39271	327 bp downstream
Tssr39272	transcription start site region 39272	311 bp downstream
Tssr39273	transcription start site region 39273	256 bp downstream
Tssr39274	transcription start site region 39274	214 bp downstream
Tssr39275	transcription start site region 39275	198 bp downstream
Tssr39276	transcription start site region 39276	162 bp downstream
Tssr39277	transcription start site region 39277	145 bp downstream
Tssr39278	transcription start site region 39278	134 bp downstream
Tssr43599	transcription start site region 43599	406 bp upstream
Tssr43600	transcription start site region 43600	363 bp upstream
Tssr43601	transcription start site region 43601	196 bp upstream