rs27590033 SNP Detail

Summary

• ID
  rs27590033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAGGTG GAGTGGCTCA
  GGGTCTCTGC TGCCATGACT TTGTGTGAGG CATGTCCTTG GGTCTGGCCC TTCTCACGGG
  GCCAGGCCTC GTTCCCCTGT AACCCTGAAT GGATGGATTC CAGACAGAGG CTTCGGTCAG
  CAGTTGCTAG GCCTCAGGTT GGCAGAGTCA GGACAGGCTG CCTGGAAATT GTGGCCCCCT
  Y
  GAGGATTTTG GCTAGGCACG GGCTAGCATC TGCTCAAACC TCTTCCTTTC TGTCTTGTTT
  TCCTGGGGAA ATTGCTTGTG TGTGTGGGGG GGGGTGTCCT GCTGGGAAGG CAATGCCTGC
  CTGGGGACCT GGGGGTGAGG AACACCCACT CCCCAGAGCT TTCCTTTCCC CACCTCCCCA
  GACTTCGAGC AGGAGTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753358	NES09165262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T		T	C	C	T		C
ss321318842	CHEV_4_130374315	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590033					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753358	NES09165262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545711 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1547 bp downstream
Tssr39264	transcription start site region 39264	1489 bp downstream
Tssr39265	transcription start site region 39265	191 bp upstream
Tssr39266	transcription start site region 39266	213 bp upstream
Tssr39267	transcription start site region 39267	231 bp upstream
Tssr39268	transcription start site region 39268	255 bp upstream
Tssr39269	transcription start site region 39269	302 bp upstream
Tssr39270	transcription start site region 39270	327 bp upstream
Tssr39271	transcription start site region 39271	366 bp upstream
Tssr39272	transcription start site region 39272	388 bp upstream
Tssr39273	transcription start site region 39273	448 bp upstream
Tssr39274	transcription start site region 39274	490 bp upstream
Tssr39275	transcription start site region 39275	506 bp upstream
Tssr39276	transcription start site region 39276	542 bp upstream
Tssr39277	transcription start site region 39277	558 bp upstream
Tssr39278	transcription start site region 39278	571 bp upstream
Tssr43599	transcription start site region 43599	289 bp downstream
Tssr43600	transcription start site region 43600	312 bp downstream
Tssr43601	transcription start site region 43601	369 bp downstream