rs27590035 SNP Detail

Summary

• ID
  rs27590035
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCAAC CAACCAAACA
  AAAATGTCAC TGTTTCCTTC TCTCGACCCT CCCTGGCCAT GGCCTCTCCT CACATCTCCT
  AACTCCCTCA TCTCGTCCCC TCCAAGCCCC TCATCTTACC CCTTCTTGAG TTGTGCCCGT
  GGCCTGGGAA GGGCTCTGCA AGAAGGCCTC ATCCCCTCTG GTGATCTGCT CACGTGTGGA
  W
  GGTGGAGTGG CTCAGGGTCT CTGCTGCCAT GACTTTGTGT GAGGCATGTC CTTGGGTCTG
  GCCCTTCTCA CGGGGCCAGG CCTCGTTCCC CTGTAACCCT GAATGGATGG ATTCCAGACA
  GAGGCTTCGG TCAGCAGTTG CTAGGCCTCA GGTTGGCAGA GTCAGGACAG GCTGCCTGGA
  AATTGTGGCC CCCTCGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753360	NES09165260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T		T	A	A	T		A
ss321318840	CHEV_4_130374120	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590035					SNP	A	A	A	A	A	A	A	A	A	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753360	NES09165260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545516 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1352 bp downstream
Tssr39264	transcription start site region 39264	1294 bp downstream
Tssr39265	transcription start site region 39265	386 bp upstream
Tssr39266	transcription start site region 39266	408 bp upstream
Tssr39267	transcription start site region 39267	426 bp upstream
Tssr39268	transcription start site region 39268	450 bp upstream
Tssr39269	transcription start site region 39269	497 bp upstream
Tssr39270	transcription start site region 39270	522 bp upstream
Tssr39271	transcription start site region 39271	561 bp upstream
Tssr39272	transcription start site region 39272	583 bp upstream
Tssr39273	transcription start site region 39273	643 bp upstream
Tssr39274	transcription start site region 39274	685 bp upstream
Tssr39275	transcription start site region 39275	701 bp upstream
Tssr39276	transcription start site region 39276	737 bp upstream
Tssr39277	transcription start site region 39277	753 bp upstream
Tssr39278	transcription start site region 39278	766 bp upstream
Tssr43599	transcription start site region 43599	484 bp downstream
Tssr43600	transcription start site region 43600	507 bp downstream
Tssr43601	transcription start site region 43601	564 bp downstream