rs27590037 SNP Detail

Summary

• ID
  rs27590037
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCTAA AATGTCACTG
  TTCTCAGGAG GCAGAGGCAG AGGCAGGCGG ATTTCTGAGT TCAAGGCCAG CCTGGTCGAC
  AAAGTGAGTT CCAGGACAGC CAGGGCTACA CAGAGAAACC TTGTCTTGAA AAAACAAACA
  AACAAAAACC CCCAAAACAA ACAAAAACCA ACCAACCAAA CAAAAATGTC ACTGTTTCCT
  K
  CTCTCGACCC TCCCTGGCCA TGGCCTCTCC TCACATCTCC TAACTCCCTC ATCTCGTCCC
  CTCCAAGCCC CTCATCTTAC CCCTTCTTGA GTTGTGCCCG TGGCCTGGGA AGGGCTCTGC
  AAGAAGGCCT CATCCCCTCT GGTGATCTGC TCACGTGTGG AAGGTGGAGT GGCTCAGGGT
  CTCTGCTGCC ATGACTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753362	NES09165256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G		G	T	T	G		T
ss321318839	CHEV_4_130373958	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27590037					SNP	T	T	T	T	T	T	G	T	T	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753362	NES09165256	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545354 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1190 bp downstream
Tssr39264	transcription start site region 39264	1132 bp downstream
Tssr39265	transcription start site region 39265	548 bp upstream
Tssr39266	transcription start site region 39266	570 bp upstream
Tssr39267	transcription start site region 39267	588 bp upstream
Tssr39268	transcription start site region 39268	612 bp upstream
Tssr39269	transcription start site region 39269	659 bp upstream
Tssr39270	transcription start site region 39270	684 bp upstream
Tssr39271	transcription start site region 39271	723 bp upstream
Tssr39272	transcription start site region 39272	745 bp upstream
Tssr39273	transcription start site region 39273	805 bp upstream
Tssr39274	transcription start site region 39274	847 bp upstream
Tssr39275	transcription start site region 39275	863 bp upstream
Tssr39276	transcription start site region 39276	899 bp upstream
Tssr39277	transcription start site region 39277	915 bp upstream
Tssr39278	transcription start site region 39278	928 bp upstream
Tssr43599	transcription start site region 43599	646 bp downstream
Tssr43600	transcription start site region 43600	669 bp downstream
Tssr43601	transcription start site region 43601	726 bp downstream