rs27590039 SNP Detail

Summary

• ID
  rs27590039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130544859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGTTTGAA AGGCCGTGGG
  ATGTCCTCAT CAGGGATGCC CTTTTTGGTC CCATCTGGAG CAGGTGACCC TTTGGGTCCA
  TCAATAGTGG GGAAGCTGAG GTTGAGGTAG GGCTACAATG GGCTTCAGGG GCCTGGGATT
  GGGTTGCTGG CTCTGTCTTT AGTCGACTGT GGGCCAGGCA GGGTGACAGT AGATGTAGCA
  R
  CTCCAGCAGG GCCTTGTGAC CAGGCAGCTG AATGACTTCT GACCCCCTTG CCACTCCCAT
  ATTCCTATCT ACTGAGGAGT TAACCTTCCT CCCAAAGGCT CTGGGAGGTG GGCACAGGCA
  GTCAGTGTGG TCATGAAGCT GCTAACTGAG GGAGCGCGCT GAGATGGACC CAGCCTGGGG
  ATGGATGTGT GACCACTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37753364	NES09165326	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		G	A	A		A
ss321318832	CHEV_4_130373463	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27590039					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753364	NES09165326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130544859 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	695 bp downstream
Tssr39264	transcription start site region 39264	637 bp downstream
Tssr39265	transcription start site region 39265	1043 bp upstream
Tssr39266	transcription start site region 39266	1065 bp upstream
Tssr39267	transcription start site region 39267	1083 bp upstream
Tssr39268	transcription start site region 39268	1107 bp upstream
Tssr39269	transcription start site region 39269	1154 bp upstream
Tssr39270	transcription start site region 39270	1179 bp upstream
Tssr39271	transcription start site region 39271	1218 bp upstream
Tssr39272	transcription start site region 39272	1240 bp upstream
Tssr39273	transcription start site region 39273	1300 bp upstream
Tssr39274	transcription start site region 39274	1342 bp upstream
Tssr39275	transcription start site region 39275	1358 bp upstream
Tssr39276	transcription start site region 39276	1394 bp upstream
Tssr39277	transcription start site region 39277	1410 bp upstream
Tssr39278	transcription start site region 39278	1423 bp upstream
Tssr43599	transcription start site region 43599	1141 bp downstream
Tssr43600	transcription start site region 43600	1164 bp downstream
Tssr43601	transcription start site region 43601	1221 bp downstream