rs27590040 SNP Detail

Summary

• ID
  rs27590040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130544430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGATGAA CTAGACGACC
  TCTACTCGGG GTCAGGCTCT GGCTGTAAGT AGTCCCCAGG TCTCCCTGCC CATCTCTGAT
  ATCTAGCACC AACCCAGGAG CCTTTAAGGT CACTTGAATG AGTCTTGCCA CTGTATGGAG
  ATCAAGACCT CAAGGAGGAG GGGGGCAGAG CAGCTTTCTG ATAGGGAGAA GACTAGGGAA
  R
  CCTTCAGAGC CCAGGACTCT TGTCCCTGTG TCTGCATGTG CAGTATGGAC CTGTGTCCAG
  CCCCGTGGCT CCTGCCTCGT GGTTTCTGCC CCGTGGCTCC TGCCCCGAGG CTCCTGCTCC
  ATGGCTCCTG CCCCGTGGCT CCTTCCCTGT GGCTCCTGCC CCGTGGCTCC TGCCCCGTGG
  CTTGTTGAAT AAACATAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753365	NES09165325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590040					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753365	NES09165325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130544430 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	266 bp downstream
Tssr39264	transcription start site region 39264	208 bp downstream
Tssr39265	transcription start site region 39265	1472 bp upstream
Tssr39266	transcription start site region 39266	1494 bp upstream
Tssr39267	transcription start site region 39267	1512 bp upstream
Tssr39268	transcription start site region 39268	1536 bp upstream
Tssr39269	transcription start site region 39269	1583 bp upstream
Tssr39270	transcription start site region 39270	1608 bp upstream
Tssr39271	transcription start site region 39271	1647 bp upstream
Tssr39272	transcription start site region 39272	1669 bp upstream
Tssr39273	transcription start site region 39273	1729 bp upstream
Tssr39274	transcription start site region 39274	1771 bp upstream
Tssr39275	transcription start site region 39275	1787 bp upstream
Tssr39276	transcription start site region 39276	1823 bp upstream
Tssr39277	transcription start site region 39277	1839 bp upstream
Tssr39278	transcription start site region 39278	1852 bp upstream
Tssr43599	transcription start site region 43599	1570 bp downstream
Tssr43600	transcription start site region 43600	1593 bp downstream
Tssr43601	transcription start site region 43601	1650 bp downstream