rs27590041 SNP Detail

Summary

• ID
  rs27590041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130544316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGTACC TAGCCCTGTG
  TGTGTCTGCA CCCCTCCCAG GCTCAACGCT GGCGCAATGA GAACTTCGAG AGGCCGGTGG
  ATCTTGAGGG CTCAGGGGAT GACGACTCGT TTCCTGATGA TGAACTAGAC GACCTCTACT
  CGGGGTCAGG CTCTGGCTGT AAGTAGTCCC CAGGTCTCCC TGCCCATCTC TGATATCTAG
  M
  ACCAACCCAG GAGCCTTTAA GGTCACTTGA ATGAGTCTTG CCACTGTATG GAGATCAAGA
  CCTCAAGGAG GAGGGGGGCA GAGCAGCTTT CTGATAGGGA GAAGACTAGG GAAGCCTTCA
  GAGCCCAGGA CTCTTGTCCC TGTGTCTGCA TGTGCAGTAT GGACCTGTGT CCAGCCCCGT
  GGCTCCTGCC TCGTGGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753366	NES09165324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590041					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753366	NES09165324	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130544316 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	152 bp downstream
Tssr39264	transcription start site region 39264	94 bp downstream
Tssr39265	transcription start site region 39265	1586 bp upstream
Tssr39266	transcription start site region 39266	1608 bp upstream
Tssr39267	transcription start site region 39267	1626 bp upstream
Tssr39268	transcription start site region 39268	1650 bp upstream
Tssr39269	transcription start site region 39269	1697 bp upstream
Tssr39270	transcription start site region 39270	1722 bp upstream
Tssr39271	transcription start site region 39271	1761 bp upstream
Tssr39272	transcription start site region 39272	1783 bp upstream
Tssr39273	transcription start site region 39273	1843 bp upstream
Tssr39274	transcription start site region 39274	1885 bp upstream
Tssr39275	transcription start site region 39275	1901 bp upstream
Tssr39276	transcription start site region 39276	1937 bp upstream
Tssr39277	transcription start site region 39277	1953 bp upstream
Tssr39278	transcription start site region 39278	1966 bp upstream
Tssr43599	transcription start site region 43599	1684 bp downstream
Tssr43600	transcription start site region 43600	1707 bp downstream
Tssr43601	transcription start site region 43601	1764 bp downstream