rs27592667 SNP Detail

Summary

• ID
  rs27592667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145286782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAATTGTTGC TGTACCACAG TGACTTCAGT TACACCCTCA
  GCTGCAAAGG ATGTGGATGT TGAAAAGCAT CTCCCACCTG TGTCTGAAAG GGTCCTGTGA
  Y
  TGTGGAAGCT ACAATGATGA TACTTTTCTC CTCCTCCTCC TCCTGCTGCT GCTGCTGCTC
  TTCCTCCTCC TCCTTCTTTT TTTCTGTTTT GTTTTTGGTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37798687	NES09113760	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	C	C	C	T
ss147865750	ENSMUSSNP2997498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592667					SNP	T	?	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37798687	NES09113760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145286782 () rs orientation: forward

Symbol	Name	Function Class
Gm21978	predicted gene 21978	417 bp upstream
Rr398684	regulatory region 398684	1962 bp downstream