rs27598141 SNP Detail

Summary

• ID
  rs27598141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137447640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC GCCCTTCTTG AGACGCTCTA
  Y
  GAGGAGCTCC ATATTCACAG CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771378	NES09132172	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T		T	T	T	T		C	C	T	T		T
ss45679204	mCV23446162	ABI	CRAMUS_MOUSE	f	SNP		C	T				C		T
ss147617736	ENSMUSSNP435977	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321366761	CHEV_4_137276244	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27598141					SNP	C	C	T	T	C	T	C	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771378	NES09132172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137447640 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	within coordinates
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	640 bp distal
Rr86557	regulatory region 86557	1961 bp proximal
Rr100343	regulatory region 100343	439 bp distal
Tssr39778	transcription start site region 39778	1106 bp downstream
Tssr39779	transcription start site region 39779	1076 bp downstream
Tssr39780	transcription start site region 39780	806 bp downstream
Tssr39781	transcription start site region 39781	604 bp downstream