rs27598143 SNP Detail

Summary

• ID
  rs27598143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137447158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA GAGCTGACTT TGAGAGTTCC
  R
  GCCCCTTCCT CTAATGGTCA CCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771380	NES09132168	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G		A	A	G	G		G
ss147617728	ENSMUSSNP4638207	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321366759	CHEV_4_137275762	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27598143					SNP	A	A	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771380	NES09132168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137447158 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	113 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	158 bp distal
Rr100343	regulatory region 100343	within coordinates
Tssr39778	transcription start site region 39778	624 bp downstream
Tssr39779	transcription start site region 39779	594 bp downstream
Tssr39780	transcription start site region 39780	324 bp downstream
Tssr39781	transcription start site region 39781	122 bp downstream