rs27598144 SNP Detail

Summary

• ID
  rs27598144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC TGCACTCAGA ATTCGGTTTC
  Y
  CTTGCCGGGA GCTTTCCCAT CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37771381	NES09132166	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C		T	C	C
ss45728500	mCV23446153	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss147617664	ENSMUSSNP405296	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss321366743	CHEV_4_137274348	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27598144					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771381	NES09132166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445744 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1527 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1057 bp proximal
Rr100343	regulatory region 100343	856 bp proximal
Tssr39776	transcription start site region 39776	1078 bp downstream
Tssr39777	transcription start site region 39777	1052 bp downstream
Tssr39778	transcription start site region 39778	781 bp upstream
Tssr39779	transcription start site region 39779	811 bp upstream
Tssr39780	transcription start site region 39780	1087 bp upstream
Tssr39781	transcription start site region 39781	1252 bp upstream