rs27599285 SNP Detail

Summary

• ID
  rs27599285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT CTGATCCCAT GATCTACAGA
  Y
  GGAAAGGTCT TAGAGCGAGG CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804404	NES09103182	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	C	T	T		C	T	T	T		C
ss148002257	ENSMUSSNP4517458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
ss321419304	CHEV_4_147709106	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27599285					SNP	C	T	C	T	C	C	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804404	NES09103182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419454 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	747 bp proximal
Tssr40270	transcription start site region 40270	1512 bp downstream