rs27599286 SNP Detail

Summary

• ID
  rs27599286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCTGAT GGAGAAAGTG
  TTTGGAGAAT CTGATGGAGA AAGTGTTCTC TCTCCAAGAA AAAACGTGCA CGAGCAAGCG
  TTGGGAGTTC ACAGCCCAGG GTGCCTCTCT CGGTCCCTAG ATAAGCTTTA GTTGAGGCTA
  GGATGATAGC TGTGACCATA GATATCCAGG GCTTCTCCTG GCATCTGATC CCATGATCTA
  Y
  AGACGGAAAG GTCTTAGAGC GAGGCCTGGG GCTACTCAAG GGAGTGGTGC AGAGTGATGT
  CAGTTCATTT CTAGTAGTGA CACGGACAGG GGAGGCACGC CCCGCTACAG CCCCACTCTT
  GAGGGGTGGA GATCCCAAAA TGGGGCTGTG TAGAAGAATT CCATACAATG TACTGTGTGG
  GAAAACCCAT GTTTCTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804405	NES09103181	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599286					SNP	T	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804405	NES09103181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419450 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	751 bp proximal
Tssr40270	transcription start site region 40270	1508 bp downstream