rs27599287 SNP Detail

Summary

• ID
  rs27599287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGTGTC ATTTGGAAAA
  GTTTCAACTG CTTGGAGAAT CTGATGGAGA AAGTGTTTGG AGAATCTGAT GGAGAAAGTG
  TTCTCTCTCC AAGAAAAAAC GTGCACGAGC AAGCGTTGGG AGTTCACAGC CCAGGGTGCC
  TCTCTCGGTC CCTAGATAAG CTTTAGTTGA GGCTAGGATG ATAGCTGTGA CCATAGATAT
  M
  CAGGGCTTCT CCTGGCATCT GATCCCATGA TCTACAGACG GAAAGGTCTT AGAGCGAGGC
  CTGGGGCTAC TCAAGGGAGT GGTGCAGAGT GATGTCAGTT CATTTCTAGT AGTGACACGG
  ACAGGGGAGG CACGCCCCGC TACAGCCCCA CTCTTGAGGG GTGGAGATCC CAAAATGGGG
  CTGTGTAGAA GAATTCCATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804406	NES09103180	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599287					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804406	NES09103180	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419415 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	786 bp proximal
Tssr40270	transcription start site region 40270	1473 bp downstream