rs27599291 SNP Detail

Summary

• ID
  rs27599291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCGTCT CGCCGGGTAT
  TTTGTCTCTT CTTGTAGCTG TTCCTAATAA CTACATCAGG CCAGAAAGTG GAGTGGGAAG
  CTGACACCTT CCATAAAACA ACTGTAGAGA GCAGGCCCTG GGGAGGCCCA GCTAACAGGC
  AGGAAAGAAA TGAAACATGG CATGGTAACC AGCAGTGGGG CCAGACTGCT GTGTGGAACA
  Y
  GCACTTGCCC AGCTGGTCAT GTGATGCTGT GAGGCTGGAG AGGAACAGAA GAGCAAGGGA
  TGACATGGGC GGAGAGAACA GGAGCCAGCC CCACCCCTCC ATCCTGCTCA CAGGTCAGAG
  CATACGCCTG CACGTGTCTT GACTAAGCTC ACCTTCAATA TAACCACCCA ATTTATGTCA
  GTCAAAAGCC TGGGGTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804410	NES09103176	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599291					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804410	NES09103176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419025 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	1176 bp proximal
Tssr40270	transcription start site region 40270	1083 bp downstream