rs27599294 SNP Detail

Summary

• ID
  rs27599294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148418759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA CATGATGGCA GAAGCGTGGC
  R
  TTGGTTTCGG TGACACGGGG AATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804413	NES09103173	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	A	G		A	G	G	G		G
ss45655678	mCV24213687	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss148002241	ENSMUSSNP4840866	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321419299	CHEV_4_147708411	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27599294					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804413	NES09103173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148418759 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	1442 bp proximal
Tssr40269	transcription start site region 40269	1991 bp downstream
Tssr40270	transcription start site region 40270	817 bp downstream