rs27599300 SNP Detail

Summary

• ID
  rs27599300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148418441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACGAC AGAAAGAGCT
  TGGCCGCCAT CAGACAGACA GACCGAAGAG CTGGGGTCTG AAGGCAGGAC CTCCATGGTT
  CTTGGAGCAC AGATCCATGT ATACACGAAG CCCTGACGTC ACCATTCAGA AGCAGGTAGA
  GTCAGCTTTG GGAACCACAG GGATACAGAC ACCGTACCCA GCTAACCAAT CATCAGCAGG
  Y
  TGGTCCAAAT CTCCAGGCCT CACCTCTCCT TCCACCAGGC CCTAGTGACA AGCCAGTAAG
  GACCCAGGGC TGTTGTCCCA GTGCCATATG GGTATTAGAG CAGAAAAGGA ATCAGGACTC
  AAATGAAGAC CTGCTTCGGA GCACGAGACA TCTGGGCCGT GATGATTCCT TCCAGGTCTT
  GCTGTCTTTG GGATTAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804419	NES09103167	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599300					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804419	NES09103167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148418441 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	1760 bp proximal
Tssr40269	transcription start site region 40269	1673 bp downstream
Tssr40270	transcription start site region 40270	499 bp downstream