rs27599305 SNP Detail

Summary

• ID
  rs27599305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148418264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAAGTA AGTTTTCATT
  TTGTCCCCAT GAGAACTACT GGAAAAGGTG GGCACCAATG TGTCCATTCT GCAGATGAGG
  GAACTGAGGC TGGCTTTAAG TCATAGAGCT AGCAGGGACA GAGCTGAAGG TGGAAGCAGT
  GCCCTCTGGA GCCAAGCCTG AAACTTGCTC TGAAAGGCAG AGACGACAGA AAGAGCTTGG
  Y
  CGCCATCAGA CAGACAGACC GAAGAGCTGG GGTCTGAAGG CAGGACCTCC ATGGTTCTTG
  GAGCACAGAT CCATGTATAC ACGAAGCCCT GACGTCACCA TTCAGAAGCA GGTAGAGTCA
  GCTTTGGGAA CCACAGGGAT ACAGACACCG TACCCAGCTA ACCAATCATC AGCAGGTTGG
  TCCAAATCTC CAGGCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804424	NES09103162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27599305					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804424	NES09103162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148418264 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	1937 bp proximal
Tssr40269	transcription start site region 40269	1496 bp downstream
Tssr40270	transcription start site region 40270	322 bp downstream