rs27599309 SNP Detail

Summary

• ID
  rs27599309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148417771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG CTGATCTGTG CCTTCAAGGC
  Y
  CCAGGGGGCT GCCACACTGA GTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37804428	NES09103219	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T		C	C
ss321419285	CHEV_4_147707423	CHEVERUD	SCREENING_POP	f	SNP						C			C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27599309					SNP	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804428	NES09103219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148417771 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	136 bp upstream
Tssr40269	transcription start site region 40269	1003 bp downstream
Tssr40270	transcription start site region 40270	165 bp upstream