rs27600228 SNP Detail

Summary

• ID
  rs27600228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137666134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC TGCCGAGCTG CAGGTAAGCC
  R
  ACGACGCGGT GTGCCGGGGA CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770384	NES09146264	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G		A	G	A	G	G	G	G	G
ss45640264	mCV24206839	ABI	CRAMUS_MOUSE	f	SNP		G	G					G	A
ss147626373	ENSMUSSNP443756	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27600228					SNP	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770384	NES09146264	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137666134 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602786	regulatory region 602786	1223 bp proximal
Tssr39800	transcription start site region 39800	546 bp upstream