rs27600809 SNP Detail

Summary

• ID
  rs27600809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172134592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCACAAG GGTCTGAGGT
  TGGCAACACC ATTATGTGCC CATTTTGCAG ATGAGAAAGA ACCAAGGTTA GCAAATACAA
  AGAATTATAC GCCGCCCCCC CCCCGACTCT GTGCCCTGAA GGGGTGGAGT ATGAACTAAA
  ACCTGGTGTT TATATATCCC TACTTCCCCC TGCTATCCAA ACTGGACTCC TTCTAGTGGG
  Y
  CCCCAAATGT CCAGCTACCT CATCATACTT CCCCCTGCCC CATCCCCCAC AATGGCCTAC
  CCAGCTCTGA CCTCATCCTG TCTCCAGTGA CAGGCTTCAA AGCAGGGTCT ATAGACCATG
  AAGATGCTAG GATCAGCCCT TGGGGGCCAT GTTAAAGGAA GAACTGCCCG GGGCTCAGAT
  CCCCACCTGA GGCTGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809428	NES08704818	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27600809					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809428	NES08704818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172134592 () rs orientation: forward

Symbol	Name	Function Class
Gm40008	predicted gene, 40008	within coordinates
Rr571641	regulatory region 571641	50 bp proximal
Rr571642	regulatory region 571642	1711 bp proximal
Rr571643	regulatory region 571643	1884 bp proximal