rs27600810 SNP Detail

Summary

• ID
  rs27600810
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172134510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCATC AATCTTCGTC
  TCGGTGTCTC ACTCAGGGGC ATCGTGAAGT AAGTGCCACT GACTGAGGGT TGGGGTCTTA
  CAGCCTCACA AGGGTCTGAG GTTGGCAACA CCATTATGTG CCCATTTTGC AGATGAGAAA
  GAACCAAGGT TAGCAAATAC AAAGAATTAT ACGCCGCCCC CCCCCCGACT CTGTGCCCTG
  W
  AGGGGTGGAG TATGAACTAA AACCTGGTGT TTATATATCC CTACTTCCCC CTGCTATCCA
  AACTGGACTC CTTCTAGTGG GTCCCCAAAT GTCCAGCTAC CTCATCATAC TTCCCCCTGC
  CCCATCCCCC ACAATGGCCT ACCCAGCTCT GACCTCATCC TGTCTCCAGT GACAGGCTTC
  AAAGCAGGGT CTATAGACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809429	NES08704817	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27600810					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809429	NES08704817	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172134510 () rs orientation: forward

Symbol	Name	Function Class
Gm40008	predicted gene, 40008	within coordinates
Rr571641	regulatory region 571641	132 bp proximal
Rr571642	regulatory region 571642	1793 bp proximal
Rr571643	regulatory region 571643	1966 bp proximal