rs27600844 SNP Detail

Summary

• ID
  rs27600844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172129841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATCCAC TGTTGCTGTT
  TCTCAACTTT AGGTCAGCAA TATGTATGAA CCCTAGGCAT GACTACATAA CTCATTATAT
  AACTTAATTA TTGTAAGAGA TGGAGCTAGC TGGAAAAAAA TCCACTATCA TCCACATCAC
  TGAGACCAGA AAAAGCCCCC TCAGCTACCC TTGGGAGGCC CTCTCCAGTG ACATGTTTGG
  Y
  GCTGTACCAC AGTGTCTAGA CTTTTTTTTC ACTCAAAATA CTTCCTCTTC CAAATAAATT
  GTTCACAAAC TAGCAATCTG TGTGGTTTGA ATAGGTATGG CCCCTGTAGT CTCTGTGTTT
  GAATGCTTGA CCCATGGGAA GCGGTACTAT TAGGAGGTGT GGCCTTGTTG GAGGACATTG
  TGGGGACAGG CTTTGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37809463	NES08705061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27600844					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809463	NES08705061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172129841 () rs orientation: forward

Symbol	Name	Function Class
Gm14275	predicted gene 14275	82 bp upstream
Gm40008	predicted gene, 40008	within coordinates
Tssr21941	transcription start site region 21941	56 bp upstream
Tssr21942	transcription start site region 21942	199 bp upstream
Tssr21943	transcription start site region 21943	224 bp upstream