rs27603964 SNP Detail

Summary

• ID
  rs27603964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170037420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTCTG TATTTTTCTG
  ACATTTGCCT TTCTCCATCA GAGTACATTT TAAAAATCAT ATGATTGTGT TGAAGTACAC
  TACATTGACT TTCCCGGTTT GTGTTTATGT GTTCCCTGGG ATTTCGAGGT GAATCCATGC
  TTTTGTTCTC ACTAGATTAA GCCCTGATAG ATAATCTGGT TTAGATATGG CTGCATTGTT
  Y
  AAATCTCTCT AATTACAGTA CAATGCAGAA CAGTAGCCAG AGGACAATTT AAATGCTCCC
  TGGAAGAAGC GGGAAATAGT AAGAAGGGTA GATTCTCAAA CCTGTCCCCC AGGGCCAATT
  TAAGGCTGCT TCGCAAAGGA GCTGTTTACA TTGCAAGTCT TAAACACCAG GCGTGTTTTT
  ACGCAGGCAG CCGTACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818587	NES08717988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27603964					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818587	NES08717988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170037420 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	1447 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	1212 bp downstream
Rr571358	regulatory region 571358	1330 bp distal
Rr571359	regulatory region 571359	1195 bp distal
Rr571360	regulatory region 571360	472 bp distal
Rr571361	regulatory region 571361	103 bp proximal
Tssr27916	transcription start site region 27916	1436 bp upstream
Tssr27917	transcription start site region 27917	350 bp downstream