rs27603965 SNP Detail

Summary

• ID
  rs27603965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170037197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGGACA GAACCCCGAT
  CTCAGAAGAG CAACAAGTGT TCCTACCGGC AGAGCCATTT CTCCACACCC CTGCCTCCCT
  TTGGTCTTTT GAGACCTGTT TAGCTGTCCT CCAACTCCAG GCAGCCTTCC TTTCCCAGCC
  TCCTTCGCGC TAGGATTCCA GGCATGCGGT ATCGTGGCTG GCATCCTTCC ACTGACCTGA
  R
  GAGTCGCGGC TAGTACCTGC TGCTGGCTTC TGTATTTTTC TGACATTTGC CTTTCTCCAT
  CAGAGTACAT TTTAAAAATC ATATGATTGT GTTGAAGTAC ACTACATTGA CTTTCCCGGT
  TTGTGTTTAT GTGTTCCCTG GGATTTCGAG GTGAATCCAT GCTTTTGTTC TCACTAGATT
  AAGCCCTGAT AGATAATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818588	NES08717987	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27603965					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818588	NES08717987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170037197 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	1224 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	989 bp downstream
Rr571358	regulatory region 571358	1107 bp distal
Rr571359	regulatory region 571359	972 bp distal
Rr571360	regulatory region 571360	249 bp distal
Rr571361	regulatory region 571361	326 bp proximal
Tssr27915	transcription start site region 27915	1813 bp upstream
Tssr27916	transcription start site region 27916	1213 bp upstream
Tssr27917	transcription start site region 27917	573 bp downstream