rs27603966 SNP Detail

Summary

• ID
  rs27603966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170036649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTTAAT TTTAAACATT
  ATTATTATTT ATTTCAGTGT ATGGATGGAT GGATGTGCAT ATGTGCGCTC GCTCATGCAC
  ATGAAGCCAT GGCCTAAGTG TGCAGAGTTT GGGGTTCACG TAATCAGACT TACACGTCCT
  GCCTTTACTC ACAGAGTAAC TTGCTACAGA TCTGGCCCTA TTTTTCTTTT TCTTCTTTTC
  W
  ATCTTAAGAC CGGGTCTCAT TATGTGGCTC TGGCATGCTT CAGCCTCCCA AGAGCTGGGA
  TTAAAAGGCA TGTGTCACCA CACCCAGCCT TTTCTTTTTC AAGATTGAGT TTTATCTATT
  TAACTTGCCC AGATCCAGAA ACATGGTCCA GTGGTAGAGT CCGCTTTTCC AGAGGACCGA
  CTGTGAGTCC CAGCACCTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37818589	NES08718016	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27603966					SNP	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818589	NES08718016	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170036649 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	676 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	441 bp downstream
Rr571357	regulatory region 571357	1633 bp distal
Rr571358	regulatory region 571358	559 bp distal
Rr571359	regulatory region 571359	424 bp distal
Rr571360	regulatory region 571360	278 bp proximal
Rr571361	regulatory region 571361	874 bp proximal
Tssr27915	transcription start site region 27915	1265 bp upstream
Tssr27916	transcription start site region 27916	665 bp upstream
Tssr27917	transcription start site region 27917	1121 bp downstream