rs27603968 SNP Detail

Summary

• ID
  rs27603968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170036586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACAGAGT GAGTTCCAGC
  CTGGGCTACA CAAAGAAACC CTGTCTTGAA AAGCCAAAAA AAAAAGATTT AATTTTAAAC
  ATTATTATTA TTTATTTCAG TGTATGGATG GATGGATGTG CATATGTGCG CTCGCTCATG
  CACATGAAGC CATGGCCTAA GTGTGCAGAG TTTGGGGTTC ACGTAATCAG ACTTACACGT
  Y
  CTGCCTTTAC TCACAGAGTA ACTTGCTACA GATCTGGCCC TATTTTTCTT TTTCTTCTTT
  TCTATCTTAA GACCGGGTCT CATTATGTGG CTCTGGCATG CTTCAGCCTC CCAAGAGCTG
  GGATTAAAAG GCATGTGTCA CCACACCCAG CCTTTTCTTT TTCAAGATTG AGTTTTATCT
  ATTTAACTTG CCCAGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818591	NES08718014	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27603968					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818591	NES08718014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170036586 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	613 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	378 bp downstream
Rr571357	regulatory region 571357	1570 bp distal
Rr571358	regulatory region 571358	496 bp distal
Rr571359	regulatory region 571359	361 bp distal
Rr571360	regulatory region 571360	341 bp proximal
Rr571361	regulatory region 571361	937 bp proximal
Tssr27915	transcription start site region 27915	1202 bp upstream
Tssr27916	transcription start site region 27916	602 bp upstream
Tssr27917	transcription start site region 27917	1184 bp downstream