rs27603970 SNP Detail

Summary

• ID
  rs27603970
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170036095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTAGAGG TGGAAGAAGA
  GAAGGTGTGG GTTTAACAGG CTACCTCTTT CTTCCATGGT GTGGTGGTGT GACCGGCAGG
  AGAGTGGGAG GGACGGTAGA CTTCCTGGCT AAGGTTGTTT ACTGTTGAGG GTTTGGCATT
  TGTAAGCCAG ACTGGGTTTT TACTGAGCAC TGTCCTATGC TTGTCTCTTG ATTAAAGAAT
  K
  CACTTTGGAA GCACAGCGTG GAGAGGGTTC CCTAGCACAC AAAACAGCCA GGGTACACCA
  GGCTACATAC CTCCCTCCTT GCTGGCCTCA AGAGTATCCT CATAAATATG TACATGTGTG
  TATGCATGTA TGTATACATA TAGACATACG TATGTAGTAT ATATATATAT AATATATTAT
  ATAATTTAAA AAAAGATTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818593	NES08718023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27603970					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818593	NES08718023	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170036095 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	122 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	within coordinates
Rr571357	regulatory region 571357	1079 bp distal
Rr571358	regulatory region 571358	5 bp distal
Rr571359	regulatory region 571359	within coordinates
Rr571360	regulatory region 571360	832 bp proximal
Rr571361	regulatory region 571361	1428 bp proximal
Tssr27915	transcription start site region 27915	711 bp upstream
Tssr27916	transcription start site region 27916	111 bp upstream
Tssr27917	transcription start site region 27917	1675 bp downstream