rs27604257 SNP Detail

Summary

• ID
  rs27604257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTACAGC ACCTGTCTCC
  AGGCTGCCTG CCCTTCGCTT TGAATTCATT CTTTAGTTCA AGAGGAATGT CTGAGCTGGA
  CTCAGCCAGC ACTGTGTTCT GCACTGTCAC AAGCCAAGGG CTACAAACGT AGCCTTTCTC
  CTGGATGAAG CCTCGGAGGC CCAGAGAAGC TAAGTGATTG GCCCAAGCTC ACACAGCTCC
  R
  AAGATACAAC CAATTGGAAT CAGGGGGTAG GGCCGCTGCA GGGTGGGGTG CTGGATAGAT
  GTAGGCTTGG CGTGTTCTGG GTGGAGGGGG GTCCCCTCGC TCCTTACCCA CCCCCCAGCC
  CCAGGAGCTA CTGAAATCAG AGTGTCAGGC TGCTCCCCAG AGCAGCTACG TTGGCGGCTG
  CGGTCGGAAC AGGGAGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786196	NES09121331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604257					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786196	NES09121331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	163 bp proximal
Gm70191	predicted gene, 70191	360 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	363 bp downstream
Rr603759	regulatory region 603759	371 bp distal
Rr603760	regulatory region 603760	within coordinates
Rr603761	regulatory region 603761	621 bp proximal
Rr603762	regulatory region 603762	1131 bp proximal
Tssr40063	transcription start site region 40063	1664 bp downstream
Tssr40064	transcription start site region 40064	1603 bp downstream
Tssr40065	transcription start site region 40065	1576 bp downstream
Tssr40066	transcription start site region 40066	1472 bp downstream
Tssr40067	transcription start site region 40067	1418 bp downstream
Tssr40068	transcription start site region 40068	1363 bp downstream
Tssr40069	transcription start site region 40069	1236 bp downstream
Tssr40070	transcription start site region 40070	1142 bp downstream
Tssr40071	transcription start site region 40071	1125 bp downstream
Tssr40072	transcription start site region 40072	1080 bp downstream
Tssr40073	transcription start site region 40073	1055 bp downstream
Tssr40074	transcription start site region 40074	1028 bp downstream
Tssr40075	transcription start site region 40075	1004 bp downstream
Tssr40076	transcription start site region 40076	988 bp downstream
Tssr40077	transcription start site region 40077	968 bp downstream
Tssr40078	transcription start site region 40078	736 bp upstream
Tssr44315	transcription start site region 44315	1599 bp upstream
Tssr44316	transcription start site region 44316	1501 bp upstream
Tssr44317	transcription start site region 44317	1473 bp upstream
Tssr44318	transcription start site region 44318	1073 bp upstream
Tssr44319	transcription start site region 44319	70 bp upstream