rs27604258 SNP Detail

Summary

• ID
  rs27604258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT TGTGGAGACC CCACCTGAAG
  W
  TCGACCTAGG AGGAGGGACG GAGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37786197	NES09121330	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27604258					SNP	T	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786197	NES09121330	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	498 bp proximal
Gm70191	predicted gene, 70191	25 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	28 bp downstream
Rr603759	regulatory region 603759	36 bp distal
Rr603760	regulatory region 603760	within coordinates
Rr603761	regulatory region 603761	956 bp proximal
Rr603762	regulatory region 603762	1466 bp proximal
Tssr40063	transcription start site region 40063	1329 bp downstream
Tssr40064	transcription start site region 40064	1268 bp downstream
Tssr40065	transcription start site region 40065	1241 bp downstream
Tssr40066	transcription start site region 40066	1137 bp downstream
Tssr40067	transcription start site region 40067	1083 bp downstream
Tssr40068	transcription start site region 40068	1028 bp downstream
Tssr40069	transcription start site region 40069	901 bp downstream
Tssr40070	transcription start site region 40070	807 bp downstream
Tssr40071	transcription start site region 40071	790 bp downstream
Tssr40072	transcription start site region 40072	745 bp downstream
Tssr40073	transcription start site region 40073	720 bp downstream
Tssr40074	transcription start site region 40074	693 bp downstream
Tssr40075	transcription start site region 40075	669 bp downstream
Tssr40076	transcription start site region 40076	653 bp downstream
Tssr40077	transcription start site region 40077	633 bp downstream
Tssr40078	transcription start site region 40078	1071 bp upstream
Tssr44315	transcription start site region 44315	1264 bp upstream
Tssr44316	transcription start site region 44316	1166 bp upstream
Tssr44317	transcription start site region 44317	1138 bp upstream
Tssr44318	transcription start site region 44318	738 bp upstream
Tssr44319	transcription start site region 44319	230 bp downstream