rs27604259 SNP Detail

Summary

• ID
  rs27604259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC CTGAGCCACA TGCCCTGCTT
  Y
  GCCCTAACTG CAGATGGTGG CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786198	NES09121329	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	T	C	T	T
ss147736194	ENSMUSSNP942923	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604259					SNP	T	C	C	C	C	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786198	NES09121329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	795 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	262 bp proximal
Rr603761	regulatory region 603761	1253 bp proximal
Rr603762	regulatory region 603762	1763 bp proximal
Tssr40063	transcription start site region 40063	1032 bp downstream
Tssr40064	transcription start site region 40064	971 bp downstream
Tssr40065	transcription start site region 40065	944 bp downstream
Tssr40066	transcription start site region 40066	840 bp downstream
Tssr40067	transcription start site region 40067	786 bp downstream
Tssr40068	transcription start site region 40068	731 bp downstream
Tssr40069	transcription start site region 40069	604 bp downstream
Tssr40070	transcription start site region 40070	510 bp downstream
Tssr40071	transcription start site region 40071	493 bp downstream
Tssr40072	transcription start site region 40072	448 bp downstream
Tssr40073	transcription start site region 40073	423 bp downstream
Tssr40074	transcription start site region 40074	396 bp downstream
Tssr40075	transcription start site region 40075	372 bp downstream
Tssr40076	transcription start site region 40076	356 bp downstream
Tssr40077	transcription start site region 40077	336 bp downstream
Tssr40078	transcription start site region 40078	1368 bp upstream
Tssr44315	transcription start site region 44315	967 bp upstream
Tssr44316	transcription start site region 44316	869 bp upstream
Tssr44317	transcription start site region 44317	841 bp upstream
Tssr44318	transcription start site region 44318	441 bp upstream
Tssr44319	transcription start site region 44319	527 bp downstream