rs27604260 SNP Detail

Summary

• ID
  rs27604260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCTGGCA AATGAGAGGC TGGCCACAAG CAGGGCTTCT
  GGCCTAGGTA GACTGCCTCA GGGAAGCCAG AGAGATAGCC ATGACTGTTA CCTTCCTTGT
  R
  ACTCTCGAAA CCTCAAACCC AGGGCTACCT GTCACCCTGA GGCTCTAACA GCTACATGTA
  CCAGACAAAG ACACCTGTAC CTAGATGGGG TTTATTAAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37786199	NES09121487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27604260					SNP	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786199	NES09121487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1336 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	325 bp proximal
Rr603760	regulatory region 603760	803 bp proximal
Rr603761	regulatory region 603761	1794 bp proximal
Tssr40062	transcription start site region 40062	1977 bp downstream
Tssr40063	transcription start site region 40063	491 bp downstream
Tssr40064	transcription start site region 40064	430 bp downstream
Tssr40065	transcription start site region 40065	403 bp downstream
Tssr40066	transcription start site region 40066	299 bp downstream
Tssr40067	transcription start site region 40067	245 bp downstream
Tssr40068	transcription start site region 40068	190 bp downstream
Tssr40069	transcription start site region 40069	63 bp downstream
Tssr40070	transcription start site region 40070	17 bp upstream
Tssr40071	transcription start site region 40071	41 bp upstream
Tssr40072	transcription start site region 40072	86 bp upstream
Tssr40073	transcription start site region 40073	109 bp upstream
Tssr40074	transcription start site region 40074	134 bp upstream
Tssr40075	transcription start site region 40075	147 bp upstream
Tssr40076	transcription start site region 40076	174 bp upstream
Tssr40077	transcription start site region 40077	193 bp upstream
Tssr40078	transcription start site region 40078	1909 bp upstream
Tssr44314	transcription start site region 44314	1861 bp upstream
Tssr44315	transcription start site region 44315	426 bp upstream
Tssr44316	transcription start site region 44316	328 bp upstream
Tssr44317	transcription start site region 44317	300 bp upstream
Tssr44318	transcription start site region 44318	58 bp downstream
Tssr44319	transcription start site region 44319	1068 bp downstream