rs27604261 SNP Detail

Summary

• ID
  rs27604261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC CAACGCAGTC CAGGGACCTG
  Y
  CTGCTCTCAC CCAGATAGAC CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37786200	NES09121484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27604261					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786200	NES09121484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1580 bp proximal
Gm70191	predicted gene, 70191	90 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	569 bp proximal
Rr603760	regulatory region 603760	1047 bp proximal
Tssr40062	transcription start site region 40062	1733 bp downstream
Tssr40063	transcription start site region 40063	247 bp downstream
Tssr40064	transcription start site region 40064	186 bp downstream
Tssr40065	transcription start site region 40065	159 bp downstream
Tssr40066	transcription start site region 40066	55 bp downstream
Tssr40067	transcription start site region 40067	1 bp downstream
Tssr40068	transcription start site region 40068	44 bp upstream
Tssr40069	transcription start site region 40069	176 bp upstream
Tssr40070	transcription start site region 40070	261 bp upstream
Tssr40071	transcription start site region 40071	285 bp upstream
Tssr40072	transcription start site region 40072	330 bp upstream
Tssr40073	transcription start site region 40073	353 bp upstream
Tssr40074	transcription start site region 40074	378 bp upstream
Tssr40075	transcription start site region 40075	391 bp upstream
Tssr40076	transcription start site region 40076	418 bp upstream
Tssr40077	transcription start site region 40077	437 bp upstream
Tssr44314	transcription start site region 44314	1617 bp upstream
Tssr44315	transcription start site region 44315	182 bp upstream
Tssr44316	transcription start site region 44316	84 bp upstream
Tssr44317	transcription start site region 44317	56 bp upstream
Tssr44318	transcription start site region 44318	302 bp downstream
Tssr44319	transcription start site region 44319	1312 bp downstream