rs27604263 SNP Detail

Summary

• ID
  rs27604263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA CTACCAGAGG ATGTGGACCC
  R
  ACATCGGTGA CCTCGGCCCT TCGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786202	NES09121480	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		A		A	G	A	G	G
ss45589090	mCV22897367	ABI	CRAMUS_MOUSE	f	SNP	G	A				A		G
ss147736129	ENSMUSSNP1033967	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604263					SNP	G	A	A	A	A	A	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786202	NES09121480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1889 bp proximal
Gm70191	predicted gene, 70191	399 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	878 bp proximal
Rr603760	regulatory region 603760	1356 bp proximal
Tssr40062	transcription start site region 40062	1424 bp downstream
Tssr40063	transcription start site region 40063	49 bp upstream
Tssr40064	transcription start site region 40064	109 bp upstream
Tssr40065	transcription start site region 40065	124 bp upstream
Tssr40066	transcription start site region 40066	253 bp upstream
Tssr40067	transcription start site region 40067	301 bp upstream
Tssr40068	transcription start site region 40068	353 bp upstream
Tssr40069	transcription start site region 40069	485 bp upstream
Tssr40070	transcription start site region 40070	570 bp upstream
Tssr40071	transcription start site region 40071	594 bp upstream
Tssr40072	transcription start site region 40072	639 bp upstream
Tssr40073	transcription start site region 40073	662 bp upstream
Tssr40074	transcription start site region 40074	687 bp upstream
Tssr40075	transcription start site region 40075	700 bp upstream
Tssr40076	transcription start site region 40076	727 bp upstream
Tssr40077	transcription start site region 40077	746 bp upstream
Tssr44314	transcription start site region 44314	1308 bp upstream
Tssr44315	transcription start site region 44315	87 bp downstream
Tssr44316	transcription start site region 44316	170 bp downstream
Tssr44317	transcription start site region 44317	228 bp downstream
Tssr44318	transcription start site region 44318	611 bp downstream
Tssr44319	transcription start site region 44319	1621 bp downstream