rs27604264 SNP Detail

Summary

• ID
  rs27604264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGAGGCT GAGCAGAAAG CCCTGAAGCT GAGTCACAAC
  CACCCTCCAC CTCATGTACC TTACCCGGAG TCTCAGGGTA CCTAGATCAT CAGAGGAGCA
  S
  GGCCAGCAGC TATCCCAGCT CTTAAGCCTG TGCTTAAGGA TATTCTTAAA TATTCTTAGA
  GGATATTTAT CAACACCTTC CTGCCACCCC CAAGCCTGGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786203	NES09121478	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604264					SNP	G	C	C	C	C	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786203	NES09121478	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1414 bp distal
Gm70191	predicted gene, 70191	1092 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1578 bp downstream
Tssr40055	transcription start site region 40055	1565 bp downstream
Tssr40056	transcription start site region 40056	1544 bp downstream
Tssr40057	transcription start site region 40057	1483 bp downstream
Tssr40058	transcription start site region 40058	1456 bp downstream
Tssr40059	transcription start site region 40059	1432 bp downstream
Tssr40060	transcription start site region 40060	1372 bp downstream
Tssr40061	transcription start site region 40061	1362 bp downstream
Tssr40062	transcription start site region 40062	731 bp downstream
Tssr40063	transcription start site region 40063	742 bp upstream
Tssr40064	transcription start site region 40064	802 bp upstream
Tssr40065	transcription start site region 40065	817 bp upstream
Tssr40066	transcription start site region 40066	946 bp upstream
Tssr40067	transcription start site region 40067	994 bp upstream
Tssr40068	transcription start site region 40068	1046 bp upstream
Tssr40069	transcription start site region 40069	1178 bp upstream
Tssr40070	transcription start site region 40070	1263 bp upstream
Tssr40071	transcription start site region 40071	1287 bp upstream
Tssr40072	transcription start site region 40072	1332 bp upstream
Tssr40073	transcription start site region 40073	1355 bp upstream
Tssr40074	transcription start site region 40074	1380 bp upstream
Tssr40075	transcription start site region 40075	1393 bp upstream
Tssr40076	transcription start site region 40076	1420 bp upstream
Tssr40077	transcription start site region 40077	1439 bp upstream
Tssr44314	transcription start site region 44314	615 bp upstream
Tssr44315	transcription start site region 44315	780 bp downstream
Tssr44316	transcription start site region 44316	863 bp downstream
Tssr44317	transcription start site region 44317	921 bp downstream
Tssr44318	transcription start site region 44318	1304 bp downstream