rs27604265 SNP Detail

Summary

• ID
  rs27604265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC TCCACCTCAT GTACCTTACC
  Y
  GGAGTCTCAG GGTACCTAGA TCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786204	NES09121476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	T	C	T	T
ss147736099	ENSMUSSNP3085833	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604265					SNP	C	C	C	C	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786204	NES09121476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1379 bp distal
Gm70191	predicted gene, 70191	1127 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1543 bp downstream
Tssr40055	transcription start site region 40055	1530 bp downstream
Tssr40056	transcription start site region 40056	1509 bp downstream
Tssr40057	transcription start site region 40057	1448 bp downstream
Tssr40058	transcription start site region 40058	1421 bp downstream
Tssr40059	transcription start site region 40059	1397 bp downstream
Tssr40060	transcription start site region 40060	1337 bp downstream
Tssr40061	transcription start site region 40061	1327 bp downstream
Tssr40062	transcription start site region 40062	696 bp downstream
Tssr40063	transcription start site region 40063	777 bp upstream
Tssr40064	transcription start site region 40064	837 bp upstream
Tssr40065	transcription start site region 40065	852 bp upstream
Tssr40066	transcription start site region 40066	981 bp upstream
Tssr40067	transcription start site region 40067	1029 bp upstream
Tssr40068	transcription start site region 40068	1081 bp upstream
Tssr40069	transcription start site region 40069	1213 bp upstream
Tssr40070	transcription start site region 40070	1298 bp upstream
Tssr40071	transcription start site region 40071	1322 bp upstream
Tssr40072	transcription start site region 40072	1367 bp upstream
Tssr40073	transcription start site region 40073	1390 bp upstream
Tssr40074	transcription start site region 40074	1415 bp upstream
Tssr40075	transcription start site region 40075	1428 bp upstream
Tssr40076	transcription start site region 40076	1455 bp upstream
Tssr40077	transcription start site region 40077	1474 bp upstream
Tssr44314	transcription start site region 44314	580 bp upstream
Tssr44315	transcription start site region 44315	815 bp downstream
Tssr44316	transcription start site region 44316	898 bp downstream
Tssr44317	transcription start site region 44317	956 bp downstream
Tssr44318	transcription start site region 44318	1339 bp downstream