rs27604268 SNP Detail

Summary

• ID
  rs27604268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTAGCCT GGTCTCTGGG CCCTACTTTC CCCCTATCTT
  TGTAGGCTTC GTACCCTGAT TTATGTTCCT TCCCTGTCTG TACCCAGGGT AAACTACAGC
  Y
  CTTTCCCAGT GGGCTCACGG GCCAGGGACC TTTACAGTCC CTCTCCAACC TAAGGGTCAC
  AGAACCTGTC TTTGGGGACC ATGCCATGGC ACCTGAGGAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786209	NES09121469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604268					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786209	NES09121469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	952 bp distal
Gm70184	predicted gene, 70184	1733 bp upstream
Gm70191	predicted gene, 70191	1554 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1994 bp downstream
Tssr40054	transcription start site region 40054	1116 bp downstream
Tssr40055	transcription start site region 40055	1103 bp downstream
Tssr40056	transcription start site region 40056	1082 bp downstream
Tssr40057	transcription start site region 40057	1021 bp downstream
Tssr40058	transcription start site region 40058	994 bp downstream
Tssr40059	transcription start site region 40059	970 bp downstream
Tssr40060	transcription start site region 40060	910 bp downstream
Tssr40061	transcription start site region 40061	900 bp downstream
Tssr40062	transcription start site region 40062	269 bp downstream
Tssr40063	transcription start site region 40063	1204 bp upstream
Tssr40064	transcription start site region 40064	1264 bp upstream
Tssr40065	transcription start site region 40065	1279 bp upstream
Tssr40066	transcription start site region 40066	1408 bp upstream
Tssr40067	transcription start site region 40067	1456 bp upstream
Tssr40068	transcription start site region 40068	1508 bp upstream
Tssr40069	transcription start site region 40069	1640 bp upstream
Tssr40070	transcription start site region 40070	1725 bp upstream
Tssr40071	transcription start site region 40071	1749 bp upstream
Tssr40072	transcription start site region 40072	1794 bp upstream
Tssr40073	transcription start site region 40073	1817 bp upstream
Tssr40074	transcription start site region 40074	1842 bp upstream
Tssr40075	transcription start site region 40075	1855 bp upstream
Tssr40076	transcription start site region 40076	1882 bp upstream
Tssr40077	transcription start site region 40077	1901 bp upstream
Tssr44314	transcription start site region 44314	153 bp upstream
Tssr44315	transcription start site region 44315	1242 bp downstream
Tssr44316	transcription start site region 44316	1325 bp downstream
Tssr44317	transcription start site region 44317	1383 bp downstream
Tssr44318	transcription start site region 44318	1766 bp downstream