rs27604270 SNP Detail

Summary

• ID
  rs27604270
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC GTACCCTGAT TTATGTTCCT
  K
  CCCTGTCTGT ACCCAGGGTA AACTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786211	NES09121467	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604270					SNP	T	T	T	T	T	T	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786211	NES09121467	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	922 bp distal
Gm70184	predicted gene, 70184	1703 bp upstream
Gm70191	predicted gene, 70191	1584 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1964 bp downstream
Tssr40054	transcription start site region 40054	1086 bp downstream
Tssr40055	transcription start site region 40055	1073 bp downstream
Tssr40056	transcription start site region 40056	1052 bp downstream
Tssr40057	transcription start site region 40057	991 bp downstream
Tssr40058	transcription start site region 40058	964 bp downstream
Tssr40059	transcription start site region 40059	940 bp downstream
Tssr40060	transcription start site region 40060	880 bp downstream
Tssr40061	transcription start site region 40061	870 bp downstream
Tssr40062	transcription start site region 40062	239 bp downstream
Tssr40063	transcription start site region 40063	1234 bp upstream
Tssr40064	transcription start site region 40064	1294 bp upstream
Tssr40065	transcription start site region 40065	1309 bp upstream
Tssr40066	transcription start site region 40066	1438 bp upstream
Tssr40067	transcription start site region 40067	1486 bp upstream
Tssr40068	transcription start site region 40068	1538 bp upstream
Tssr40069	transcription start site region 40069	1670 bp upstream
Tssr40070	transcription start site region 40070	1755 bp upstream
Tssr40071	transcription start site region 40071	1779 bp upstream
Tssr40072	transcription start site region 40072	1824 bp upstream
Tssr40073	transcription start site region 40073	1847 bp upstream
Tssr40074	transcription start site region 40074	1872 bp upstream
Tssr40075	transcription start site region 40075	1885 bp upstream
Tssr40076	transcription start site region 40076	1912 bp upstream
Tssr40077	transcription start site region 40077	1931 bp upstream
Tssr44314	transcription start site region 44314	123 bp upstream
Tssr44315	transcription start site region 44315	1272 bp downstream
Tssr44316	transcription start site region 44316	1355 bp downstream
Tssr44317	transcription start site region 44317	1413 bp downstream
Tssr44318	transcription start site region 44318	1796 bp downstream