rs27604271 SNP Detail

Summary

• ID
  rs27604271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAGGAA ACATCAAGAC
  CCTCGGGGAT GCCTACGAGT TTACAGTGGA CATGAGAGAC TTCTCCCCTG AAGACATCAT
  TGTCACCACC TTCAACAACC ACATCGAGGT GCGGGCTGAG AAGGTGAGTC TGGCCCCTGG
  CCCGCCCCAG GGTCCCCACC TTTGCTCCTG CACTCTGCCT GGTCTAGCCT GGTCTCTGGG
  Y
  CCTACTTTCC CCCTATCTTT GTAGGCTTCG TACCCTGATT TATGTTCCTT CCCTGTCTGT
  ACCCAGGGTA AACTACAGCC CTTTCCCAGT GGGCTCACGG GCCAGGGACC TTTACAGTCC
  CTCTCCAACC TAAGGGTCAC AGAACCTGTC TTTGGGGACC ATGCCATGGC ACCTGAGGAC
  CCTCTAGGGA TGGGCAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786212	NES09121466	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss147736069	ENSMUSSNP6636503	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604271					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786212	NES09121466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150023 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	872 bp distal
Gm70184	predicted gene, 70184	1653 bp upstream
Gm70191	predicted gene, 70191	1634 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1914 bp downstream
Tssr40054	transcription start site region 40054	1036 bp downstream
Tssr40055	transcription start site region 40055	1023 bp downstream
Tssr40056	transcription start site region 40056	1002 bp downstream
Tssr40057	transcription start site region 40057	941 bp downstream
Tssr40058	transcription start site region 40058	914 bp downstream
Tssr40059	transcription start site region 40059	890 bp downstream
Tssr40060	transcription start site region 40060	830 bp downstream
Tssr40061	transcription start site region 40061	820 bp downstream
Tssr40062	transcription start site region 40062	189 bp downstream
Tssr40063	transcription start site region 40063	1284 bp upstream
Tssr40064	transcription start site region 40064	1344 bp upstream
Tssr40065	transcription start site region 40065	1359 bp upstream
Tssr40066	transcription start site region 40066	1488 bp upstream
Tssr40067	transcription start site region 40067	1536 bp upstream
Tssr40068	transcription start site region 40068	1588 bp upstream
Tssr40069	transcription start site region 40069	1720 bp upstream
Tssr40070	transcription start site region 40070	1805 bp upstream
Tssr40071	transcription start site region 40071	1829 bp upstream
Tssr40072	transcription start site region 40072	1874 bp upstream
Tssr40073	transcription start site region 40073	1897 bp upstream
Tssr40074	transcription start site region 40074	1922 bp upstream
Tssr40075	transcription start site region 40075	1935 bp upstream
Tssr40076	transcription start site region 40076	1962 bp upstream
Tssr40077	transcription start site region 40077	1981 bp upstream
Tssr44314	transcription start site region 44314	73 bp upstream
Tssr44315	transcription start site region 44315	1322 bp downstream
Tssr44316	transcription start site region 44316	1405 bp downstream
Tssr44317	transcription start site region 44317	1463 bp downstream
Tssr44318	transcription start site region 44318	1846 bp downstream